PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038146
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 303aa    MW: 34542.7 Da    PI: 8.3495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038146genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.83e-20262300239
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEE CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkve 39 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v 
  PGSC0003DMP400038146 262 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVT 300
                           7************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-21246300IPR003657WRKY domain
SuperFamilySSF1182903.14E-18254300IPR003657WRKY domain
PROSITE profilePS5081120.771256302IPR003657WRKY domain
SMARTSM007742.6E-13261302IPR003657WRKY domain
PfamPF031063.6E-17263300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDKGWGLTLE NKPFFGFNHM MNRREEQLVA DHDKKEVDFF SHHNRKPIHH DFIKKEDSNT  60
TTITTPSEFI VNTGLQLVTA SDQSTVDDGI SSEIILEEER AKNELAQLQV ELRRMNAENQ  120
RLRGMLTQVT NNYTALQMHL ATLMQQQQQQ QISTTQNTHD QIVEAKFDQE KIVPGRFLEL  180
GRSDNDLSHN SHSSSEERTV SKSPRNDTQV TRHNKAGREE SPESESWVPN KVPKLNSSMP  240
TDATMRKARV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVT  300
SN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2802630.0KF280263.1 Solanum tuberosum WRKY transcription factor (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350473.10.0PREDICTED: WRKY transcription factor 6-like
SwissprotQ9C5192e-80WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM1BZU60.0M1BZU6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000567250.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-77WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]